PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 1703aa    MW: 185949 Da    PI: 5.4488
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919390.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-0616841703626
                      -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    6 CrffartGtCkyGdrCkFaHg 26  
                      Cr f+++G+Ck G++C++ H+
  XP_010919390.1 1684 CR-FHENGHCKKGASCNYLHP 1703
                      88.9999*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.1E-8134193IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.94E-7136192IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.538138204IPR019787Zinc finger, PHD-finger
CDDcd155685.65E-20140185No hitNo description
SMARTSM002492.8E-7140186IPR001965Zinc finger, PHD-type
PROSITE patternPS013590141201IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475922.05E-21355434IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.2E-26355440IPR003121SWIB/MDM2 domain
PfamPF022012.2E-16360433IPR003121SWIB/MDM2 domain
SMARTSM001510.0015373438IPR019835SWIB domain
PROSITE profilePS5136029.509496629IPR004343Plus-3 domain
SMARTSM007197.2E-48496606IPR004343Plus-3 domain
SuperFamilySSF1590423.01E-33497625IPR004343Plus-3 domain
PfamPF031263.8E-24501604IPR004343Plus-3 domain
SuperFamilySSF552777.72E-15834893IPR003169GYF domain
PROSITE profilePS5082912.876838890IPR003169GYF domain
SMARTSM004445.3E-11839892IPR003169GYF domain
Gene3DG3DSA:3.30.1490.405.3E-15840892IPR003169GYF domain
PfamPF022132.7E-9841882IPR003169GYF domain
PROSITE profilePS5010313.65716781703IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1703 aa     Download sequence    Send to blast
MNGEEDELLD VRTLDQIGEE PPLPPLPESE ETTLPHWEDE GEGGAAMIGA TEVDDSQLLF  60
SPSAGPSPLI GDEEEASAFD PAAPGDSAAG EEAPKMGAAI ADPRAEAASQ GIGKRKRGRP  120
PKAQGGGRAL PAKRKEEEEV CFICFDGGNL VVCDRRGCSK VYHPACVNRD DAFFRTRGRW  180
NCGWHICSIC EKAAQYMCYT CTYSLCKVCI REANFFSVRG SKGFCETCYS TVILIESNEN  240
GNENKAAVDF NDRNSWEYLF KEYWLDQKRK LVLTLEELKN AKNLWKGSGV SAYNGESSDE  300
LYNANDDQED SSESSSGYHD GSASSRKKVR KHRNTVDDES SAKEVDGEMT SMPEYPEWAS  360
QELLEFVVHM KNGDKSVLTQ FDVQALLLEY IKRNNLRDPR KKSQIVCDQR LQNLFGKARV  420
GHFEMLKLLE SHFLIKEASQ ADADDNQAVV IDPDSGQVDA EGYSDTTARM SLDKRRKCRK  480
KIEEREPQTN LDDYAAIDVH NINLIYLRRN LMENLIDDID SFNEKVVGSF VRIRIPGTGQ  540
RQDMYRLVQV VGTQMFAEKY KIGKKTTDIA LQILNLDKTE VATIDIISNQ DFTEEECKRL  600
RQSIKCGLIS RLTVGDIQKK ARVLQAVRVD DWLESEKLRL GHLRDRASET GRRKELRECV  660
EKLQILSTPE ERMRRLNEVP EIHVDPHMDP DYESAEEEVD DKKGDKYSRL RESLSRRKGR  720
DLFPPGRVSG SNYNGTGASI SSSSLNRGSR TEDAQDKLDA YSGGDRTNEL SWNQGKDAQW  780
TKSWGMPNTQ TSATDLEAGI WNNNQLATKP GSTHGVVSET SASVPSRLSV PSNGNENDKV  840
WHYQDPAGIV QGPFSMAQLR KWNKFFPPDL RIWLTTEKQE NSVLLMDALK SQNGLPQQDT  900
QHNGHLQPAN FAGPKGNRDS KYEGGWRGAN NSTWVGMQNG SNWSVSQNNA TFSTAGNTLA  960
NAGRWATQSA NLSALEMEAV KGNDAWFGQP NGQRSPRSTA PFSGNPYQQP SYQGGGDQGN  1020
AVVWNRGPDH GIAWNSDRSR GSRTGGQGYE RQHSSWSFLN QQSQQTSGEP WKARPTNDSN  1080
LHVPTQQPSR TDWTSVQGSL HASASTAASI QPISSGWGTT QGTGFSGPHK LPTVNPDGDR  1140
NVLNQSDSGG SWSVASASVP SMSRMADVGG AQILETVDQF GNPPLSSQQK PTESNAPKIL  1200
VNQSALFLKK KEIISSDDAT VSGGPAMNKS QSFESGYPSP TPQSDRQEFS VDEPNESDPA  1260
KKWPQAHDSS ASISQGSDPD PASLAFRPLD PHAHLSPKVG NMQLLSRNSD EDVADKGIIS  1320
EMQNLSAQKS LSEEQNKQPP LAVVEEKLVD PASSIKPTVE SDMLELSSAQ RSETASASKP  1380
LSELQEPNGS SIVPAPSGRE LHFSGPDPIK YSDLEGTQDT TTSEWSLPSP TPGSRPSGWD  1440
IGADSTSGRL PNPGWGTKAK DVPSWGGAPQ LNVGTGPAQQ SENRGWATAI QGHAHADSGA  1500
PTQVNTNTNA GWGTLGQVSN NAKIDCGAQV QGNTNANLRW EPPAWGNLTS PSLGAPFQGN  1560
SNPNTSWCAP IQGNSNQFSG WGVPPTGNGN QNLGWGAQAQ QVNRDASAGW GTGSNRSWNL  1620
PAGDPDSWGT QRMHHGENHP EGGESRHGGG RSLWNRSQSA SSGGSSRIPP RGEGPKGQGQ  1680
RGVCRFHENG HCKKGASCNY LHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2naa_A2e-15136207472Histone-lysine N-methyltransferase, H3 lysine
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919390.10.0PREDICTED: zinc finger CCCH domain-containing protein 19-like isoform X1
TrEMBLM0S9570.0M0S957_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P18660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP717938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding